Murat Dundar, Daniel Hirleman, Arun K. Bhunia, J. Paul Robinson, and Bartek Rajwa, “Learning with a Nonexhaustive Training Dataset. A Case Study: Detection of Bacteria Cultures using Optical-Scattering Technology”, To Appear in Proceedings of the  Fifteenth Annual SIGKDD International Conference on Knowledge Discovery and Data Mining, June 28-July 1 2009, Paris, France. (Regular Paper, Acceptance rate: 9.8%)

Glenn Fung,  Balaji Krishnapuram,  Jinbo Bi,  Murat Dundar, Vikas Raykar, Shipeng Yu,  Romer Rosales,  Sriram Krishnan, R. Bharat Rao, “Mining Medical Images”, Third Workshop on Data Mining Case Studies and Practice Prize, Fifteenth Annual SIGKDD International Conference on Knowledge Discovery and Data Mining, June 28-July 1 2009, Paris, France (First place prize winner).

Le Lu, Matthias Wolf, Jianming Liang, Murat Dundar, Jinbo Bi and Marcos Salganicoff, "A Two-level Approach Towards Semantic Colon Segmentation: Removing Extra-colonic Findings",  To Appear in Proceedings of the 12^th International Conference on Medical Image Computing and Computer Assisted Intervention,  September 20-24, 2009, London, UK.

Murat Dundar and Glenn Fung, “Kernel Fisher Discriminant for Hyperspectral Data Analysis”, To appear in Kernel Methods for Remote Sensing Data Analysis. Edited by Gustavo Camps-Valls and Lorenzo Bruzzone, John Wiley & Sons.

Murat Dundar, Matthias Wolf, Sarang Lakare, Marcos Salganicoff, Vikas Raykar “Polyhedral Classifiers for Target Detection: A Case Study: Colorectal Cancer”, In Proceedings of the 25th International Conference on Machine Learning (ICML 2008), pp.288-295, Helsinki, July 2008.

Vikas C. Raykar, Balaji Krishnapuram, Jinbo Bi, Murat Dundar, and R. Bharat Rao, “Bayesian Multiple Instance Learning: Automatic Feature Selection and Inductive Transfer” , In Proceedings of the 25th International Conference on Machine Learning (ICML 2008), pp.808 - 815, Helsinki, July 2008.

Murat Dundar, Glenn Fung, Balaji Krishnapuram, Bharat Rao, “Multiple Instance Learning Algorithms for Computer Aided Diagnosis”, IEEE Transactions on Biomedical Engineering, Volume 55, No. 3, pp 1005-1015, March 2008.

Murat Dundar, Matthias Wolf, Sarang Lakare, and Marcos Salganicoff, "Training a CAD Classifier with Different Polyp Morphologies for Virtual Colonoscopy", MICCAI 2008 Workshop on Computational and Visualization Challenges in the New Era of Virtual Colonoscopy, September 2008.

Jinbo Bi, Tao Xiong, Shipeng Yu, Murat Dundar, Bharat Rao, "An Improved Multi-task Learning Approach with Applications in Medical Diagnosis", Proceedings of the 18th European Conference on Machine Learning (ECML'08), 2008 (Acceptance Rate: 19%, Oral Presentation)

Murat Dundar, Matthias Wolf, Sarang Lakare, Marcos Salganicoff, Vikas Raykar “Polyhedral Classifiers for Target Detection: A Case Study: Colorectal Cancer”, International Conference on Machine Learning, Helsinki, Finland, July 5-9 2008 (Acceptance Rate: 27%, Oral Presentation)

Murat Dundar, Jinbo Bi, “An AND-OR Framework for Learning a Cascade Classifier”, IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR ‘07), 18-23 June 2007, Minneapolis, Minnesota, USA (Acceptance Rate: 4.8%, Oral Presentation)

Murat Dundar, Balaji Krishnapuram, Jinbo Bi, Bharat Rao, “Learning from Non-IID Data”, In proceedings of the 20th International Joint Conference on Artificial Intelligence (IJCAI 2007), Hyderabad, India, January 6-12, 2007 (Acceptance Rate: 15.7%, Oral Presentation).

Murat Dundar, B. Krishnapuram, Matthias Wolf, Sarang Lakare, Luca Bogoni, J. Bi, and R. B. Rao, “Training a CAD classifier with correlated data” Proceedings of SPIE 6514, 65140H (2007)

Matthias Wolf, P. Cathier, Sarang Lakare, Murat Dundar, and Luca Bogoni, "Efficient detection of polyps in CT colonography", Proceedings of SPIE 6514, 651408 (2007)

Glenn Fung, Murat Dundar, Balaji Krishnapuram, Bharat Rao, “Multiple Instance Algorithms for Computer Aided Diagnosis”, Advances in Neural Information Processing Systems 19 (NIPS 2006), Vancouver, CA, 2006 (Acceptance Rate: 24%, Poster Presentation).

L.Bogoni, P.Cathier, Murat Dundar, A.Jerebko, S.Lakare, J.Liang, S.Periaswamy, M.Baker and M.Macari, "CAD for Colonography: A tool to address a growing need," The British Journal of Radiology, 78 (2005), pp57-62.

Murat Dundar, James Theiler, and Simon Perkins. ``Incorporating Spatial Contiguity into the Design of a Support Vector Machine Classifier.'' In Proceedings of IEEE International Geoscience and Remote Sensing Symposium (IGARSS ‘06), 364-367 (Invited Paper).

Jinbo Bi, Glenn Fung, Murat Dundar, Bharat Rao, “Semi-Supervised Mixture of Kernels via LPBoost Methods”, In Proceedings of the Fifth IEEE international Conference on Data Mining (ICDM ‘05). IEEE Computer Society, November 27 - 30, 2005, Washington, DC, 569-572.  (Acceptance Rate: 28%).

Murat Dundar, Glenn Fung, Jinbo Bi, Sandilya Sathyakama, Bharat Rao, “Sparse Fisher Discriminant Analysis for Computer Aided Detection”, SIAM International Data Mining Conference (SDM ’05), 2005, Newport Beach, CA, USA (Acceptance Rate: 40%, Poster Presentation).

P.Cathier , S.Periaswamy, A.Jerebko, Murat Dundar, J.Liang, G.Fung, J.Stoeckel, T. Venkata, R.Amara, A.Krishnan, B.Rao, A.Gupta, E.Vega, S.Laks, A.Megibow, M.Macari, and L.Bogoni, “CAD for Polyp Detection: an Invaluable Tool to Meet the Increasing Need for Colon-Cancer Screening”, Computer Assisted Radiology and Surgery (CARS 04). Proceedings of the 18th International Congress and Exhibition, Chicago, USA, June 23-26, 2004.

Murat Dundar, G. Fung, Luca Bogoni, M. Macari, A. Megibow, B. Rao, “A Methodology for Training and Validating a CAD System and Potential Pitfalls,” Computer Assisted Radiology and Surgery (CARS ‘04). Proceedings of the 18th International Congress and Exhibition, Chicago, USA, June 23-26, 2004.

Glenn Fung, Murat Dundar, Jinbo Bi, and R. Bharat Rao, “A fast iterative algorithm for fisher discriminant using heterogeneous kernels” In Proceedings of the Twenty-First international Conference on Machine Learning (ICML '04), July 04 - 08, 2004, Banff, Alberta, Canada, vol. 69. ACM Press, New York, NY, 40  (Acceptance Rate: 32%, Oral presentation).

Murat Dundar and David Landgrebe, “A Kernel-based Supervised Classifier for the Analysis of Hyperspectral Data,” IEEE Workshop on Advances in Techniques for Analysis of Remotely Sensed  Data, Greenbelt MD, October 2003.

Murat Dundar and David Landgrebe, "A Cost-effective Semi-supervised Classifier Approach with Kernels," IEEE Transactions on Geoscience and Remote Sensing, Volume 42, No. 1, pp 264-270, January, 2004.

Murat Dundar and David Landgrebe, "Toward an Optimal Supervised Classifier for the Analysis of Hyperspectral Data," IEEE Transactions on Geoscience and Remote Sensing, Volume 42, No. 1, pp 271-277, January, 2004.

Murat Dundar and David Landgrebe, "A Model Based Mixture Supervised Classification Approach in Hyperspectral Data Analysis," IEEE Transactions on Geoscience and Remote Sensing, Volume 40, No. 11, pp 269 -2699, December 2002.

Peer-reviewed Abstracts:

 Sarang Lakare, Matthias Wolf, Murat Dundar, A. Jerebko, Luca Bogoni, and Marcos Salganicoff, “Evaluation of a Prototype Colonic Polyp Detection System on Polyps Submerged in Tagged Material”, European Congress of Radiology, ECR 2008, March 2008, Abstract accepted for oral presentation.

Matthias Wolf, Sarang Lakare, Murat Dundar, Luca Bogoni, and Marcos Salganicoff, “Performance analysis of a CAD system on at, sessile, and pedunculated polyps”, European Congress of Radiology, ECR 2008, March 2008. Abstract accepted for oral presentation.

Luca Bogoni, A. Barbu, Sarang Lakare, Murat Dundar, Matthias Wolf, and L. Lu, “Learning based Component for Suppression of False Positives located on the Ileo Cecal Valve: Evaluation of Performance on 802 CTC Cases”, In Scientific Assembly and Annual Program of Radiological Society of North America (RSNA), November 2007. Abstract accepted for oral presentation.

Luca Bogoni, Matthias Wolf, Sarang Lakare, Murat Dundar, A. Jerebko, and Marcos Salganicoff, “Automated Polyp Detection: An Evaluation of a CAD System in over 1200 Cases”, In Scientific Assembly and Annual Program of Radiological Society of North America (RSNA), November 2007. Abstract accepted for oral presentation.

Luca Bogoni, Matthias Wolf, Sarang Lakare, Murat Dundar, “Automatic polyp detection in over 1000 CTC cases: Clean and tagged performance”, European Congress of Radiology, ECR 2007, March 2007. Abstract accepted for oral presentation.

Wolf, Lakare, Dundar, Bogoni, Salganicoff, “Automated polyp detection: An evaluation of a CAD system on flat, sessile, and pedunculated polyps", ISVC 2007

Sarang Lakare, Matthias Wolf, Luca Bogoni, Adrian Barbu, Murat Dundar, Le Lu, Marcos Salganicoff,  “Evaluation of a Learning-based Component for Suppression of False Positives Located on the Ileo Cecal Valve or Rectal Tube”,  ISVC 2007

Sarang Lakare, A. Barbu, Murat Dundar, Matthias Wolf, Luca Bogoni, and D. Comaniciu, “Learning-based Component for Suppression Rectal Tube False Positives: Evaluation of Performance on 780 CTC Cases”, In Scientific Assembly and Annual Program of Radiological Society of North America (RSNA), November 2006. Abstract accepted for oral presentation.

Matthias Wolf, A. Krishnan, Marcos Salganicoff, J. Bi, Murat Dundar, G. Fung, J. Stoeckel, S. Periaswamy, H. Shen, P. Herzog, D. P. Naidich, “CAD Performance Analysis for Pulmonary Nodule Detection on Thin-slice MDCT Scans DOC”,  Computer Assisted Radiology and Surgery (CARS ‘05), Proceedings of the 19th International Congress and Exhibition Berlin, Germany, June 22 - 25, 2005.

Luca Bogoni, A. Jerebko, Murat Dundar, J. Lee, M. Baker, M. Macari, “A Multisite Study to Evaluate CAD’s Performance in Polyp Detection”, In Scientific Assembly and Annual Program of Radiological Society of North America (RSNA), November 2004. Abstract accepted for oral presentation..

Luca Bogoni, A. Jerebko, P. Cathier, S. Periaswamy, Murat Dundar, J. Liang, G. Fung, B. Rao, A. Megibow and M. Macari, “Automatic Polyp Detection: CAD System Performance”, 14th Annual Meeting of the European Society of Gastrointesinal and Abdominal Radiology (ESGAR ’04), June 15 - 18, Geneva, Switzerland.

Matthias Wolf, A. Krishnan, Marcos Salganicoff, J. Bi, Murat Dundar, G. Fung, J. Stoeckel, S. Periaswamy, H. Shen, P. Herzog, D. P. Naidich, "CAD Performance Analysis for Pulmonary Nodule Detection on Thin-slice MDCT Scans DOC", 14th Annual Meeting of the European Society of Gastrointesinal and Abdominal Radiology (ESGAR ’04), June 15 - 18, Geneva, Switzerland.